PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016490796.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 271aa    MW: 30810.9 Da    PI: 8.9761
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016490796.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.21.6e-06113132120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C++C+k+F+r  nL+ H+
  XP_016490796.1 113 FSCHICHKTFNRYNNLQMHM 132
                     89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.23E-5108135No hitNo description
Gene3DG3DSA:3.30.160.601.7E-4113132IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.55113135IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.388113140IPR007087Zinc finger, C2H2
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
SMARTSM00355100160192IPR015880Zinc finger, C2H2-like
SMARTSM00355150197217IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MERLYLASSS SVENQIEPFD FFAEKTQNAF EFLSLSQPSE KEIRLSNDQE NPNSCHWPDK  60
EDDVTVALHI GLPNFSKAST KIPTGHNKGD ANIAATNYWI PTPSQILVGF TQFSCHICHK  120
TFNRYNNLQM HMWGHGSQYR KGPESLKGTQ PRAMLGIPCY CCEEGCKNNK NHPRAKPLKD  180
FRTLQTHYKR KHGTKRFACR KCGKCLAVKG DWRTHEKNCG KRWLCICGSD FKHKRSLKDH  240
IASFGEGHGP CPPNSFEGVE VQRAGTYSVF V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009761488.10.0PREDICTED: protein TRANSPARENT TESTA 1
RefseqXP_016490796.10.0PREDICTED: protein TRANSPARENT TESTA 1-like
SwissprotQ8VWG31e-106TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLK4BTX01e-159K4BTX0_SOLLC; Uncharacterized protein
STRINGSolyc04g074320.1.11e-158(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132641517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-108C2H2 family protein